Codes
This software is under constant development, and is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY!
Please contact me if you have any problems or suggestions.
Mdyn – Mobile Dynamics for Epidemiology
Python and R codes for mobile geolocation data treatment. Also includes epidemiology models on complex networks, which were used in the COVID19 pandemic.
iModel – Icosahedral grid tools for geophysical fluid dynamics modelling
The software is a pack of tools to work with icosahedral and Voronoi geodesic grid based geophysical fluid models. Fully written in Fortran, with outputs using GMT/Python/Matlab.
MPAS-Research – Research version of the Model for Prediction Across Scales
Version of the Model for Prediction Across Scales (MPAS) used for research by the Computational Geophysical Fluid Dynamics group at the University of São Paulo.
VoronoiShallowWater.jl – Shallow water model on Voronoi meshes
Shallow water model written in Julia, using Voronoi tessellation meshes. Spherical and planar bi-periodic meshes are supported.
SWE-nonlinear-interactions – Nonlinear wave interactions in the rotating shallow water equations
Python toolkit for studying nonlinear wave interactions in the rotating shallow water equations on the sphere, using the normal modes of the linearised equations (Hough harmonics).